Cytoplasm Dynamics & Complexity Group

Recent Papers from our Group

The list contains papers written by the Group after it was created. Last names of the group members are in bold.

Keep calm, take care, and publish papers

Earlier papers of the PI (dr. Tomasz Skóra)

Works from Postdoc and PhD. In this list, only PI's last name is in bold, to facilitate identification of his contribution and experience in a given field of study. These works have been written when dr. Tomasz Skóra has been working at the University of Utah (PostDoc) and in the Institute of Physical Chemistry PAS as well as at the Jagiellonian University (PhD).

2025

  • Skóra T., Hastings, E. M., Carney, K. R., Fu, H. C., Bidone, T. C., Sigala, P. A. Chemical propulsion of hemozoin crystal motion in malaria parasites Proceedings of the National Academy of Sciences 122(44), e2513845122
    doi: 10.1073/pnas.2513845122
  • Skóra T., Wu, J., Beckett, D., Xue, W, Voth, G. A.. Bidone, T. C. On the Curvature and Relaxation of Microtubule Plus-end Tips Biophysical Journal
    doi: 10.1016/j.bpj.2025.07.003
  • Wu, J., Dasetty, S., Beckett, D., Wang, Y., Xue, W., Skóra, T., Bidone, T. C., Ferguson, A. L., Voth, G. A. Data-Driven Equation-Free Dynamics Applied to Many-Protein Complexes: The Microtubule Tip Relaxation Biophysical Journal
    doi: 10.1016/j.bpj.2025.01.009

2024

  • Skóra T. On the importance of the diffusivity gradient term in Brownian dynamics simulations Biophysical Journal 123, 2638-2640
    doi: 10.1016/j.bpj.2024.05.034
  • Andrzejak, M., Mazur, G., Musser, A. J., Petelenz, P., Skóra, T. Properties of Coherent Vibrational Wavepackets Critically Depend on the Method of Their Generation The Journal of Physical Chemistry C 128, 9837–9846
    doi: 10.1021/acs.jpcc.4c01485
  • Skóra, T., Joshi, O., Yarema, A., Rabbitt, R. D., Bidone, T. C. Contributions of the individual domains of αIIbβ3 integrin to its extension: Insights from multiscale modeling Cytoskeleton 81, 393-408
    doi: 10.1002/cm.21865
  • Raczyłło, E., Gołowicz, D., Skóra, T., Kazimierczuk, K., Kondrat, S. Size Sensitivity of Metabolite Diffusion in Macromolecular Crowds Nano Letters 24, 4801–4809
    doi: 10.1021/acs.nanolett.3c05100

2023

  • Skóra, T., Słyk, E., Kondrat, S. Minimal Coarse-Grained Model for Immunoglobulin G: Diffusion and Binding under Crowding The Journal of Physical Chemistry B 127, 7442–7448
    doi: 10.1021/acs.jpcb.3c02383
  • Skóra, T., Janssen, M., Carlson, A., Kondrat, S. Crowding-regulated binding of divalent biomolecules Physical Review Letters 130, 258401
    doi: 10.1103/PhysRevLett.130.258401
  • Skóra T.. Diffusion and reactions under crowding: Theory and simulations Dissertation, Institute of Physical Chemistry PAS.
    PDF

2022

  • Słyk, E., Skóra T., Kondrat, S. How macromolecules softness affects diffusion under crowding Soft Matter 18, 5366–5370
    doi: 10.1039/D2SM00357K

2021

  • Skóra, T., Popescu, M. N., Kondrat, S. Conformation-changing enzymes and macromolecular crowding Physical Chemistry Chemical Physics 23, 9065–9069
    doi: 10.1039/D0CP06631A

2020

  • Andrzejak, M., Mazur, G., Skóra, T., Petelenz, P. Soft selection rules for femtosecond Pump–probe vibrational coherence spectroscopy The Journal of Physical Chemistry C 124, 23501-23510
    doi: 10.1021/acs.jpcc.0c06504
  • Skóra, T., Vaghefikia, F., Fitter, J., Kondrat, S. Macromolecular crowding: how shape and interactions affect diffusion The Journal of Physical Chemistry B 124, 7537–7543
    doi: 10.1021/acs.jpcb.0c04846
  • Andrzejak, M., Skóra, T., Petelenz, P. Limitations of generic chromophore concept for femtosecond vibrational coherences The Journal of Physical Chemistry C 124, 3529-3535
    doi: 10.1021/acs.jpcc.9b11772

2018

  • Andrzejak, M., Skóra, T., & Petelenz, P. Is vibrational coherence a byproduct of singlet exciton fission? The Journal of Physical Chemistry C 123, 91–101
    doi: 10.1021/acs.jpcc.8b09124